Package: baytrends 2.0.12

Erik W Leppo

baytrends: Long Term Water Quality Trend Analysis

Enable users to evaluate long-term trends using a Generalized Additive Modeling (GAM) approach. The model development includes selecting a GAM structure to describe nonlinear seasonally-varying changes over time, incorporation of hydrologic variability via either a river flow or salinity, the use of an intervention to deal with method or laboratory changes suspected to impact data values, and representation of left- and interval-censored data. The approach has been applied to water quality data in the Chesapeake Bay, a major estuary on the east coast of the United States to provide insights to a range of management- and research-focused questions. Methodology described in Murphy (2019) <doi:10.1016/j.envsoft.2019.03.027>.

Authors:Rebecca Murphy, Elgin Perry, Jennifer Keisman, Jon Harcum, Erik W Leppo

baytrends_2.0.12.tar.gz
baytrends_2.0.12.zip(r-4.5)baytrends_2.0.12.zip(r-4.4)baytrends_2.0.12.zip(r-4.3)
baytrends_2.0.12.tgz(r-4.4-any)baytrends_2.0.12.tgz(r-4.3-any)
baytrends_2.0.12.tar.gz(r-4.5-noble)baytrends_2.0.12.tar.gz(r-4.4-noble)
baytrends_2.0.12.tgz(r-4.4-emscripten)baytrends_2.0.12.tgz(r-4.3-emscripten)
baytrends.pdf |baytrends.html
baytrends/json (API)
NEWS

# Install 'baytrends' in R:
install.packages('baytrends', repos = c('https://tetratech.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/tetratech/baytrends/issues

Datasets:

On CRAN:

6.97 score 12 stars 97 scripts 440 downloads 63 exports 61 dependencies

Last updated 24 days agofrom:fc7ad64f69. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 28 2024
R-4.5-winOKOct 28 2024
R-4.5-linuxOKOct 28 2024
R-4.4-winOKOct 28 2024
R-4.4-macOKOct 28 2024
R-4.3-winOKOct 28 2024
R-4.3-macOKOct 28 2024

Exports:.checkRange.chkParameter.ExpLNmCens.ExpNmCens.F.findFile.fmtPval.gamANOVA.gamCoeff.gamDiffPORtbl.gamPlotCalc.H.H1.H2.H3.H4.H5.initializeResults.mergeFlow.mergeSalinity.P.reAttDF.T.V.vTableanalysisOrganizeDataappendDateFeaturesbaseDaybaseDay2decimalcloseOutcreateResidualsdectimedectime2Datedetrended.flowdetrended.salinityeventLeneventNumeventSeqfillMissingfilterWgtsflwAveragePredgamDiffgamPlotDispgamPlotDispSeasongamTestgamTestSeasongetUSGSflowimputeimputeDFlayerAggregationloadDataloadExcelloadModelsloadModelsResidmakeSurvDFmiss2nana2missnobssaveDFseasAdjflowselectDataunSurvunSurvDF

Dependencies:askpassbitbit64cachemcellrangerclicliprcpp11crayoncurldataRetrievaldigestdplyrevaluatefansifastmapfitdistrplusgenericsgluehighrhmshttrjsonliteknitrlatticelifecyclelubridatemagrittrMASSMatrixmemoisemgcvmimenlmeopensslpanderpillarpkgconfigplyrprettyunitsprogressR6Rcppreadrreadxlrematchrlangsessioninfosurvivalsystibbletidyselecttimechangetzdbutf8vctrsvroomwithrxfunxml2yaml

Flow and Salinity Data Sets

Rendered fromDetrending_Flow_and_Salinity_Data.Rmdusingknitr::rmarkdownon Oct 28 2024.

Last update: 2020-11-20
Started: 2020-11-12

Processing Censored Water Quality Data

Rendered fromProcessing_Censored_Data.Rmdusingknitr::rmarkdownon Oct 28 2024.

Last update: 2020-11-18
Started: 2020-11-12